Disease and Phenotype Track (phenotype)
The Pistoia Alliance Ontologies Mapping project team organises this
track based on a real use case where it is required to find alignments between
disease and phenotype ontologies.
Paper describing the experiences and results in the OAEI 2016 Disease and Phenotype track:
Paper surveying the opportunities of ontology alignment in biomedical research:
- Ian Harrow, Ernesto Jimenez-Ruiz, Andrea Splendiani, Martin Romacker, Peter Woollard,
Scott Markel, Yasmin Alam-Faruque, Martin Koch, James Malone, and Arild Waaler. Matching Disease and Phenotype Ontologies in the Ontology Alignment Evaluation Initiative.
Journal of Biomedical Semantics, 2018. [pdf][pdf@Springer][paper@JBS]
- Ian Harrow, Rama Balakrishnan, Ernesto Jimenez-Ruiz, Simon Jupp, Jane Lomax, Jane Reed, Martin Romacker, Christian Senger, Andrea Splendiani, Jabe Wilson, PeterWoollard. Ontology mapping for semantically enabled applications. Drug Discovery Today, 2019 [paper@drudis]
This track is organized by Ian Harrow,
Ernesto Jimenez Ruiz, and Andrea Splendiani.
If you have any problems working with the ontologies or any suggestions
related to this track, feel free to write an email to ian [.] harrowconsulting [at] gmail [.] com or to ernesto [.] jimenez [.] ruiz [at] gmail [.] com
The track is currently supported by the Pistoia Alliance Ontologies Mapping project, and the SIRIUS Centre for Research-driven Innovation. It was supported in the past by the BigMed project (Research Council of Norway), and the AIDA project.